Bibliography Background About KRIS
Hypothesis 4: Dams are impeding recovery of Atlantic salmon in the Sheepscot river watershed.
Literature Foundation
It is widely known that dams restrict flow, limit fish passage, and alter the physical and chemical characteristics of a river (World Commission on Dams, 2000). In Maine, the National Academy of Sciences (NAS, 2003), concluded that the greatest impediment to Atlantic salmon recovery is the obstruction of passage and degradation of habitat caused by dams. The NAS (2003) also noted that dams on Maine's coastal watersheds account for 40% of the changes to water quality, 60% of habitat changes other than water quality, 85% of the passage problems, and 15% of the changes in predator/prey dynamics. (See page on Dams on Maine Atlantic Salmon Rivers also).
Dams create discontinuity within a river system (WCD, 2000). They can modify flow regimes, water temperatures, dissolved oxygen concentrations, turbidity, quality and quantity of food for aquatic organisms, and shift the upstream-downstream energy transfer within the watershed (Annear et al., 2004). Reservoirs formed by dams create environments that are more characteristic of a pond than a river, shifting biotic communities from a lotic environment to a lentic environment. Dams alter river hydrology by restricting natural flow processes, shifting flow peaks to which fish like salmon are accustomed (Netboy, 1974). Modifications to flow can also result in channel instability, increased bank erosion, bed degradation or aggradation, and simplification or modification of riparian or instream biota (Dunne and Leopold, 1978).
The reservoirs created     by dams can often result in stratification that has a profound effect on water     temperature and water quality (WCD, 2000). Because there is very little movement     of the water in reservoirs, distinct thermal layers are created where warm water     temperatures are found at the surface and much cooler temperatures are found     near the bottom during summer. These warm water layers may be ideal habitat     for nonnative introduced species, such as bass (NAS, 2003). An increased nutrient     layer within the reservoir created by restricted downstream movement of sediments     and organic matter can result in an increase in organic decomposition, consequently     leading to reduced oxygen levels (NOAA & USFWS, 2004). Dams may also change     nutrient cycling in a river, which can in turn have a profound impact on biota     (Annear et al., 2004).
            
		  Anadromous fish represent a very important component of a rivers energy cycle     as they transport marine derived nutrients all the way into the upper reaches     of the watershed (Bilby et al. 1996 and 1998; Wipfli et al. 1998) and dams may     impede this upstream flow of nutrients (WCD, 2003). Although most studies on     the importance of salmon and terrestrial nutrient cycles are from the West Coast     and pertain to Pacific salmon species, rivers in the Gulf of Maine likely derived     similar benefits in energy transfer because of multiple anadromous species in     addition to Atlantic salmon (see Fish     Population Background page). On the River Bran in Northern Scotland, Nislow     and Armstrong (in review) found that large stocking rates and low adult returns     of Atlantic salmon caused a drain on the net phosphorous budget of the river     and decreased primary production due to loss of marine-derived nutrients likely     effects the entire ecosystem. Over time, the reduction of these marine-derived     inputs may have the potential of creating a negative feedback loop, gradually     depriving the system of its nutrients, and resulting in an overall decrease     in stream productivity (Wipfli et al., 1998). 
Sheepscot Literature and Data
Over the course of history, there were 17 man made dams in the Sheepscot River that effectively blocked fish passage (Meister, 1982), but Halsted (2002) noted that a total of 42 dams still exist in the watershed today (see table). Four dams on the main branches of the Sheepscot River are recognized as potentially limiting fish passage and impacting both channel morphology and hydrology of reaches below. Arter (2004) described water quality problems assoicated with Sheepscot River dams, and expressed concern that several dams are barriers to migration for Atlantic salmon (see Table 3.8.1 from Arter).
The Maine Atlantic           Salmon Commission (MASC, 1997) noted that "Coopers Mills dam on the           Sheepscot River may be restricting fish passage and thereby reducing available           habitat." Coopers Mills is located approximately 14.5 km above head           of tide (picture at left). The dam is 12 feet high, 185 feet long and           made of stone and concrete with a denile fishway near the right bank.           The dam is considered structurally unsafe and fish passage is often compromised           due to leaks and cracks in the dam, and deteriorating flood gates that           divert flow away from the fishway (NOAA & USFWS, 2004). Note           water percolating through the dam at lower right in the photo. This dam           creates an impoundment that is an extension of Long Pond, which favors           warm water fishes (MDIFG, 1961). 
An offer from Trout Unlimited to assist with removal or further modification of Coopers Mills dam in the mid-1990's was rejected because of public concerns related to an existing alewife fishery at the dam and water supply for a hydrant. Trout Unlimited (Jeff Reardon, personal communication) is nearing completion of a study to evaluate the dam and related hydrologic factors in order to help formulate options to remove or repair the dam or otherwise improve fish passage, as well as meet other community needs.
The Head Tide Dam           (at left) is the lowest on the Sheepscot, located just above the top of           tidal influence in the town of Alna. Bryant and Fletcher (1951) initiated           studies to remedy fish passage and in 1952 the dam was modified to allow           fish passage for salmon and alewives. Meister (1982) noted that the dam           was not effectively breached until 1968 when a small hole was made in           the dam near the river left abutment. NOAA and USFWS (2004) stated that,           although Head Tide Dam was allowing fish passage, it was changing Atlantic           salmon habitat. Arter (2004) shared the concern regarding habitat changes           at Head Tide and at Coopers Mills Dam, which are both "run of the           river" type dams, but also suggested that Head Tide Dam may still           partially impede Atlantic salmon migration during some periods. This photo,           taken in October 2004, shows low flow conditions that might impede passage           of adults or juvenile Atlantic salmon. 
The two other remaining dams recognized as having substantial potential to block Atlantic salmon migration are at the outlets of Branch Pond near the headwaters of the West Branch, and Sheepscot Lake which lies in the upper Sheepscot and East Branch watersheds (see map below). The dam at Sheepscot Lake does have a fish ladder, though for a period of time up until 2004 the fishway was installed backwards in an attempt to exclude alewives from entering Sheepscot Lake (Jed Wright, personal communications). Prior to 2000 the fishway was often closed at least part of the year to exclude lamprey passage into the lake (Kircheis, 2004). The dam at Branch Pond does not have fish passage, denying all fish species upstream access into Branch Pond.
This map of the upper           Sheepscot River watershed and headwaters of the West Branch shows dam           locations and color coded heights as well as lakes and ponds. While the           dam at the outlet of Branch Pond is higher (10-15 ft.) than the one at           the outlet of Sheepscot Pond (6-10 ft.), the latter creates a larger impoundment.
The lower Sheepscot           River is shown here with mainstem dams and their heights displayed. Coopers           Mills Dam is at the outlet of Long Pond on the mainstem Sheepscot as is           Head Tide Dam near Alna, which is shown at the lower left of the map.           At the Head of Tide, high flows can create velocities through the breach           that are too strong to pass most allosids and small resident fish such           as cyprinids or juvenile salmonids. At Coopers Mills Dam, lack of maintenance           of the dam and the fishway has made the fishway impassible during low           flow periods when no water flows through the fishway. It may also delay           passage during high flow periods because of a loss of fishway attraction           as fish are diverted to the high flows going through the deteriorated           flood gates on the opposite shore. In recent years, these two dams have           been managed to reduce passage of alewives and lampreys because of concerns           that these species may interfere with the recreational fisheries in Sheepscot           Lake. The Dyer River, shown at middle right on the map, also has a mainstem           dam, although it is unknown whether it presents fish passage problems           for Atlantic salmon (Arter, 2002).

This photo shows           the old abandoned mill that sits on top of the dam at the outlet of Branch           Pond at the headwaters of the West Branch Sheepscot River. This dam has           no fish passage facilities.
The dam at the outlet of Dyer Pond on the Dyer River is shown at right. This is a lower Sheepscot River tributary and the dam is near its headwaters. It is not currently recognized as impeding Atlantic salmon migration, but the low gradient of the Dyer River would have likely allowed historic production in this reach.
Relationship to Other Hypotheses (Potential Casual Mechanisms)
Hypothesis #1: NAS (2003) indicates that dams are the greatest limiting factor to Atlantic salmon recovery. That dams have limited the species in the Sheepscot basin is well established by historic (Bryant and Fletcher, 1951; Foye, 1967; Meister, 1982) and recent (MASC, 1997; NOAA & USFWS, 2004) literature.
Hypothesis #2: Arter (2004) notes the relationship of dams to stream warming, particularly in the Sheepscot River reach below Coopers Mills Dam and Long Pond. There is likely a connection between impoundments and stream warming resulting from pond limnology and flow depletion (Arter, 2004).
Hypothesis #3: The channel morphology of the Sheepscot River and its ability to support Atlantic salmon are both impacted by dams. Some river reaches are submerged by reservoirs and become more suitable for warm water species than salmonids. Gravel supply needed for spawning substrate and large wood recruitment for increased habitat complexity may be impeded by dams.
Hypothesis #6: There is a clear link between impoundments in the Sheepscot River watershed and proliferation of nonnative fish that compete with and predate upon Atlantic salmon (Bryant and Mahoney, 1950; Meister, 1982).
Alternate Hypothesis: Sheepscot River fish passage     problems related to dams have been remedied and other dam related problems can     be remedied sufficiently to recover Atlantic salmon.
 
		  Atlantic salmon only use     portions of the Sheepscot River watershed and fish passage problems at key dams,     such as Head Tide and Coopers Mills, have been addressed sufficiently to allow     passage. While impoundments may favor warm water species in summer, the range     of Atlantic salmon does not extend upstream of many major impoundments, thus     limiting the effects of competition and predation from introduced species. Warming     of reservoirs above dams in summer may negatively affect salmon, but reaches     below dams are also kept free of anchor ice, which benefits winter rearing.     Factors other than dams are limiting Atlantic salmon production.
        
Monitoring Trends to Test the Hypotheses
Removing a dam and monitoring limnological and biological response would be a way to test whether Atlantic salmon would rebound in response. Factors that would need to be monitored in addition to fish standing crops would be cross sectional profiles, gravel size (D50), fine sediment in spawning gravels, water temperatures and benthic macroinvertebrates. Fish studies should include all species because dam removal may change the fish community structure, favoring salmonids and reducing the number of warm water species.
Computer modeling could be used to determine how the dams affect water temperature. It is likely that additional water temperature data would need to be collected to put into the model, but modeling temperatures in rivers and lakes is a long-established practice that can produce accurate results if done properly. Once the model is developed and calibrated, various scenarios could be modeled and results examined. Examples of scenarios include changes in riparian vegetation, changes in water withdrawal, and dam removal.
References
Annear, T., I. Chisholm, H. Beecher, A. Locke, P. Aarrestad, C. Coomer, C. Estes, J. Hunt, R. Jacobson, G. Jobsis, J. Kauffman, J. Marshall, K. Mayes, G. Smith, C. Stalnaker, and R. Wentworth. 2004. Instream Flows for Riverine Resource Stewardship (revised edition). Instream Flow Council, Cheyenne, Wyoming. http://www.instreamflowcouncil.org/justreleased.htm
Arter, B. S. 2004. Sheepscot River Water Quality Monitoring Strategic Plan: A guide for coordinated water quality monitoring efforts in an Atlantic salmon watershed in Maine. Prepared for the Project SHARE: Research and Management Committee. 84 pp. [975kb]
Bilby, R.E., Fransen, B.R., and Bisson, P.A. 1996. Incorporation of nitrogen and carbon from spawning coho salmon into the trophic system of small streams: evidence from stable isotopes. Can. J. Fish. Aquat. Sci. 53:164-173.
Bilby, R.E., Fransen, B.R., Bisson, P.A., and Walter, J.K. 1998. Response of juvenile coho salmon ( Oncorhynchus kisutch) and steelhead ( Oncorhynchus mykiss) to the addition of salmon carcasses to two streams in southwestern Washington, U.S.A. Can. J. Fish. Aquat. Sci. 55:1909-1918.
Bryant, F. G. and J.V. Mahoney. 1950. West Branch of the Sheepscot River stream survey. Memo file cards containing information. U.S. Fish and Wildlife Service, Atlantic Salmon Investigations for the Maine Atlantic Sea Run Salmon Commission. Bangor, ME. 53 pp. 3.5Mb**
Bryant, F. G. and J.S. Fletcher. 1951. A report on the Head Tide, (Jewett's), and King's Mill Dams and other obstructions on the Sheepscot River with recommendations for providing for adequate passage of salmon and other fish. U.S. Fish and Wildlife Service, Atlantic Salmon Investigations. 6 pp. 25kb**
Danie, D.S., J. G. Trial, and J. G. Stanley. 1984. Species profiles: life histories and environmental requirements of coastal fish and invertebrates (North Atlantic) -- Atlantic salmon. U.S. Fish Wildlife Service.. FWVOBS-82/11.22. U.S. Army Corps of Engineers, TR EL-82-4. 19 pp. [500kb]
Dunne and Leopold. 1978. Water in Environmental Planning. WH Freeman an Company, New York.
Foye, R.E. 1967. Maine Rivers: the historical Sheepscot. Maine Department of Inland Fisheries and Game. 9(2): 8-11.
Halsted, M. 2002. The Sheepscot River, Atlantic Salmon and Dams: A Historical Reflection. SVCA, Alna, MA. 36 p
Kircheis, D. 2004. [currently incomplete citation]
Meister, A. L. 1982. Sheepscot: An Atlantic salmon river management report. Atlantic Sea Run Salmon Commission. Bangor, ME. 47 pp. [3.7Mb]**
National Marine Fisheries Service (NOAA) and U.S. Fish and Wildlife Service (USFWS). 2004. Draft Recovery Plan for the Gulf of Maine Distinct Population Segment of Atlantic Salmon (Salmo salar). National Oceanic and Atmospheric Administration, NMFS, and Northeastern Region USFWS. Silver Spring and Hadley, MA. 239 pp. [950 kb]
National Oceanic and Atmospheric Administration (NOAA). 2004. Anadromous Fish and Dams. NOAA National Marine Fisheries Service website. U.S. Dept of Commerce. http://www.nmfs.noaa.gov/habitat/habitatprotection/anadromousfishdam.htm
National Research Council. 2003. Atlantic Salmon in Maine. Committee on Atlantic Salmon of Maine, National Research Council, National Academy of Sciences, National Academy Press, Washington D.C. [3.5Mb]
Netboy, Anthony. 1974. The Salmon: Their Fight for Survival. Houghton Mifflin Company, Boston, MA. 319 p.
Nislow, K.H., Armstrong, J.D and McKelvey, S. 2004. Phosphorus flux due to Atlantic salmon (Salmo salar) in an oligotrophic upland stream: effects of management and demography. Can. J. Fish. Aquat. Sci./J. Can. Sci. Halieut. Aquat. 61(12): 2401-2410 Abstract available at: http://pubs.nrc-cnrc.gc.ca/cgi-bin/rp/rp2_abst_e?cjfas_f05-006_61_ns_nf_cjfas
Reardon, Jeff: Trout Unlimited Northeast Region Coordinator. Personal communication.
Wipfli, M.S., Hudson, J.P., Chaloner, D.T., and Caouette, J.P. 1999. Influence of salmon spawner densities on stream productivity in southeast Alaska. Can. J. Fish. Aquat. Sci. 56:1600-1611.
World Commission on Dams. 2000. Dams and Development. Earthscan Publications Ltd. London, G.B. and Sterling, VA, USA. http://www.dams.org/report/